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Crowd-control by RNA: a pervasive theme in biology

期刊: RNA, 2023; 29 (7)

As we continue to find new regulatory roles for RNAs, a theme is emerging in which regulation may not be mediated through the actions of a specific RN......

Rational design of eukaryotic riboswitches that up-regulate IRES-mediated translation initiation with high switching efficiency through a kinetic trapping mechanism in vitro

期刊: RNA, 2023; 29 (12)

In general, riboswitches functioning through a cotranscriptional kinetic trapping mechanism (kt-riboswitches) show higher switching efficiencies in re......

Exploring structural determinants and the role of nucleolin in formation of the long-range interactions between untranslated regions of p53 mRNA

期刊: RNA, 2023; 29 (5)

p53 protein is a key regulator of cellular homeostasis by coordinating the framework of antiproliferative pathways as a response to various stress fac......

The two Gtsf paralogs in silkworms orthogonally activate their partner PIWI proteins for target cleavage

期刊: RNA, 2023; 29 (1)

The PIWI-interacting RNA (piRNA) pathway is a protection mechanism against transposons in animal germ cells. Most PIWI proteins possess piRNA-guided e......

Molecular basis for GIGYF-TNRC6 complex assembly

期刊: RNA, 2023; 29 (6)

The GIGYF proteins interact with 4EHP and RNA-associated proteins to elicit transcript-specific translational repression. However, the mechanism by wh......

Remarkable improvement in detection of readthrough downstream-of-gene transcripts by semi-extractable RNA-sequencing

期刊: RNA, 2023; 29 (2)

The mammalian cell nucleus contains dozens of membrane-less nuclear bodies that play significant roles in various aspects of gene expression. Several ......

Cysteine tRNA acts as a stop codon readthrough-inducing tRNA in the human HEK293T cell line

期刊: RNA, 2023; 29 (9)

Under certain circumstances, any of the three termination codons can be read through by a near-cognate tRNA; i.e., a tRNA whose two out of three antic......

The pseudotorsional space of RNA

期刊: RNA, 2023; 29 (12)

The characterization of the conformational landscape of the RNA backbone is rather complex due to the ability of RNA to assume a large variety of conf......

Nuclear SRP9/SRP14 heterodimer transcriptionally regulates 7SL and BC200 RNA expression

期刊: RNA, 2023; 29 (8)

The SRP9/SRP14 heterodimer is a central component of signal recognition particle (SRP) RNA (7SL) processing and Alu retrotransposition. In this study,......

Mouse nuclear RNAi-defective 2 promotes splicing of weak 5' splice sites

期刊: RNA, 2023; 29 (8)

Removal of introns during pre-mRNA splicing, which is central to gene expression, initiates by base pairing of U1 snRNA with a 5' splice site (5'SS). ......

Computational design and experimental verification of pseudoknotted ribozymes

期刊: RNA, 2023; 29 (6)

The design of new RNA sequences that retain the function of a model RNA structure is a challenge in bioinformatics because of the structural complexit......

On the origin of life: an RNA-focused synthesis and narrative

期刊: RNA, 2023; 29 (8)

Darwin's assertion that it is mere rubbish thinking, at present, of origin of life is no longer valid. By synthesizing origin of life (OoL) research f......

The kinesin motor KIF1C is a putative transporter of the exon junction complex in neuronal cells

期刊: RNA, 2023; 29 (1)

Neurons critically depend on regulated RNA localization and tight control of spatiotemporal gene expression to maintain their morphological and functi......

Global profiling of the RNA and protein complexes of Escherichia coli by size exclusion chromatography followed by RNA sequencing and mass spectrometry (SEC-seq)

期刊: RNA, 2023; 29 (1)

New methods for the global identification of RNA-protein interactions have led to greater recognition of the abundance and importance of RNA-binding p......

Small noncoding RNA interactome capture reveals pervasive, carbon source-dependent tRNA engagement of yeast glycolytic enzymes

期刊: RNA, 2023; 29 (3)

Small noncoding RNAs fulfill key functions in cellular and organismal biology, typically working in concert with RNA-binding proteins (RBPs). While pr......

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